If you use DAVI, please cite:

P. Saighi, C. Jaouadi, F.R.J Vieira and J.S Bernardes, DAVI: a tool for clustering and visualising protein domain architectures.

If you use DAMA, please cite:

J.S. Bernardes, F.R.J. Vieira, G. Zaverucha and A. Carbone. (2015) A multi-objective approach accurately resolves protein domain architectures. Bioinformatics.