2dSS secondary structure visualization

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View 2d Alignment

For the sequence text box:

Insert Sequence here :
Acof_DPh3 ------------------------------------------------------------ Acof_DPh4 -----------------------------------------------MAPPPKDITLSSA Acof_DPh1 XDYLQQHQHKKTHKKKTIDSLIHSLMTMPPD---EETSGDGDETGHR---PPNNNGVKEI Acof_DPh2 -------------------------MTI---FQKIGRWGRGKKNKSSATPPPRVFTNPFT Ptri_DPh ---------------------------------------------------MSGANYREA Srob_Dph4 -------------------------MSSASTS---------------------------S Srob_Dph2 -------------------------MSASTTSKKLN--GDGDSQPAE--AAAAGDDDELM Srob_Dph1 -------------------------MSM----------------------------NTHI Srob_Dph3 -------------------------ME--------------------------------- Esil_Phy3 ------------------------------------------------------------ Esil_Phy1 ------------------------------------------------------------ Evir_Phy ------------------------------------------------------------ Fvir_Phy ------------------------------------------------------------ Firr_Phy ------------------------------------------------------------ Acof_DPh3 -----MAPPDSMEDLPFRETLVEQAQLSECDRIDLNL--LGNIQGDTAHVAFMTYPE--- Acof_DPh4 SQQLSQATGDEEATLTFRETLMEDIQLNECDYMNLNFLXLGNIQGDTSNVAFVSYPA--- Acof_DPh1 SFQTS---SGERIPKTSAPSVITDEELFECDHIPLHL--IGHIQGNTGHVIFVTFPL--- Acof_DPh2 GRQSKTDREASREASGDPVTNVTKLDLYGCDAESIHL--CGKIQGACGHVLFFDQPS--- Ptri_DPh DFP-------GVRAAGRHNNSITTKELTECDREPVHL--IANVQGGTGHLLFIHYPS--- Srob_Dph4 SYQE----MSSEPTMARGAPSLPSKELSDCDREQLHL--LAHIQGSAGNVFFVSFPD--- Srob_Dph2 GWADDDEKD----NNADRERLISNRELSECDREELHL--IGHVQGNAGHTMFISSPE--- Srob_Dph1 EFPKDQDRKTAASTRLADRNKISEKELSECDREQLHL--VGHIQGGSGHVIFLSYPS--- Srob_Dph3 MFA--KRRSGVGGLEESDLSSITEKELSECDKEKLHL--LGNIQDGAGHVLLFSHSD--- Esil_Phy3 --------------------MRSS-GGCDGDM--RTA--STHIQSCGC-AFAIEETADDM Esil_Phy1 ----------------------MS-HSCSGDPERLAQ--IGHIQGCGY-LFAVQETT-TG Evir_Phy --------------------MKMTDRASDCDLLDLAK--IAEIQSEGF-LVCTHFKRDSM Fvir_Phy ---------------------------MSCDKIDLDR--IAKIQDVGW-LFIIKESVDI- Firr_Phy --------------------------MDSCDRINLYR--TNAIQRVGS-LVITRATNGR- Acof_DPh3 ----GEVIAMDRNFHRLPFMKHFKAD---------------------------------- Acof_DPh4 ----LEMVAMDTKFRDLAFMKQRVKG---------------------------------- Acof_DPh1 ----GQVVAVDENIRDLEWITAPPGAP--------------------------------- Acof_DPh2 ----GTIVAADERIMEVLWIQTPND----------------------------------- Ptri_DPh ----GKILAHDRDIEHIPWIRCHENRTVTAGRT----------------GARTTSSFHG- Srob_Dph4 ----WIIIAADATVKSIPWILERGMSRMDP------------------------PSPHSV Srob_Dph2 ----AKILACDSMIRRIPWVRRWGGNKRPSSAISQEEDEIPEPAPATENNRKKPPPFRNH Srob_Dph1 ----GQIIAADAHVRAVPWVRKRGTMPLKR---------KGE--FSSNNNNMDTTGKC-G Srob_Dph3 ----GEIVAADMKIGQVPWIRIPGTPELDG---------VPS--PS---DRLEPPRKE-R Esil_Phy3 YPSGLRILGVSQNAVEAPWAY---ASS--------------------------------- Esil_Phy1 YPSGLRIVTVSQNIMEAPWVQ---ASS--------------------------------- Evir_Phy ---RLQIRNVSSNIGDAPFSLPAVRRD--------------------------------- Fvir_Phy ------ITHVSENVVDLDWVD---LNS--------------------------------- Firr_Phy ------VTHVSNNFSDIEWTA---FDT--------------------------------- Acof_DPh3 ---------------------------------------------------DIQEQVIGG Acof_DPh4 -----------------------------------------------------NDVILGK Acof_DPh1 ---------------------------------------------------SGARAMLGT Acof_DPh2 ------------------------------------------------DQGDKVTSVIGV Ptri_DPh -------------------------------------------EQQSGESPHEAIGISGG Srob_Dph4 ---------------------------------------RP------ALNHKRLRDILGT Srob_Dph2 KVVVSSAPSQDQPVAESSSQQQQQTRQPTKQARKQQHSQDQQDQQERIRQQKDVESLIGT Srob_Dph1 -----------------ESQD--GTESTTTACSHAAMSVDTE------EMENKSREILGA Srob_Dph3 -----------------RVEQ--GN-----------ESWGQG------EGEVVPRTLLGH Esil_Phy3 -----------------------------------------------------VSDLLGK Esil_Phy1 -----------------------------------------------------ESDILGK Evir_Phy -----------------------------------------------------PHLFVGK Fvir_Phy -----------------------------------------------------PREFIGK Firr_Phy -----------------------------------------------------PEEFVGK Acof_DPh3 TIKEHFPEALHKKVTDAVEAMIEASHL--------------------------------- Acof_DPh4 SAEGYLPPSMFKKVKKAIEDMVKSSLL--------------------------------- Acof_DPh1 PLNAWVPKNMQQAIMRAMYHSTRNGLV--------------------------------- Acof_DPh2 PFQACIPKNVYTSLMEAVKSMQDGLLS--------------------------------- Ptri_DPh FLLNWVPHDFYEKILDLVLGIIHSDTH--------------------------------- Srob_Dph4 PFSRWIPFDLAADIRTAAEEMVQTKSR--------------------------------- Srob_Dph2 PLQDWVPFDLYTKITNEVETMKKAKST--------------------------------- Srob_Dph1 FLQYWIPFGLYQDLFEAIEGMKMAKST--------------------------------- Srob_Dph3 KLQECIPSKLYSSTQDAIETMKKAMSQ--------------------------------- Esil_Phy3 DLGHLLRVECVRTVRSLVTRYAQACKPSH---EDDDHISPKANRIT-ADACPSPR----- Esil_Phy1 DLGDMLREECVQTVRALVTRYTQASQPR------NDRISPKVNRTT-ADIYSCPA----A Evir_Phy CVPDCFSESFADRISALFQRHLGNRSARCSYTCDSPHKRR--YLV-------TASRTTDG Fvir_Phy KVGEVVVDPTVSDALGNLLR--------------NPSRSARTGLLTYNQSCTVITRDDGT Firr_Phy DFREIFTNKKIWRAVCAIQMQT--------SSCTHNNYRSKTGMVATDMACTVICRNT-H Acof_DPh3 REFVFYSDDT-TATHLSVCVS-TATPGDYSILGIEMEILDETEMLDITASSEELHKTLAT Acof_DPh4 REFVFDWDND-IFYSLCVSTT-TTDIQKDTLFSIEIEILDEMAMLDICAERDTLGRTLTN Acof_DPh1 RNFYFE-----QGYALSVV----VASAEKNLFALEIEAAEGEDI------LDKYNDTLMY Acof_DPh2 RTFQFVAHDG-VNYAVTLA----STFSDYRRISVEIEV-DSQTT------SHAFNATLVY Ptri_DPh RNFYFYSYDG-SAYAISIS----ATEMDYSVIGIEIETVGLDDT------ASHFSSSLLH Srob_Dph4 RVFRFFSYRG-DSYSITVFKATASKNNPYSQLGIEVELLDKTES------ANSFYDSLTS Srob_Dph2 RTFLFYEHR-KDAYAISLS----TTTRAFENICIEIEEVESTEA------AGEFYNTLVS Srob_Dph1 RTFHFYKHK-RKSYAITLS----STSRDCSVVGLEIEEVDGNEA------TSDFYSTLVS Srob_Dph3 RTFRFFNPDGSQNWAISLS----SSKEDFSIICIEIEETEDFEG------GGNFYNTLIS Esil_Phy3 IRGELRPGAASG--AEGDIASFTVTGSNPGVYLVDVER-HGSDC-----ARVEHTPGLLL Esil_Phy1 AHAGLVPGEEDD--PTKAVFTFTLTGSNPGVYLVEVERKHGPHS-----ARAQHTPGLLQ Evir_Phy LVFEVFPDDN------SPLEAFDMGH--GGDLCALLV--H-TEQ-----A-ALFEAACAA Fvir_Phy TLLEIVPRGP------T--FSFFDSP--NTVFSMETI--NQIEK-----ATNMTEAGAAA Firr_Phy TLFEFVSRDL------S--DSFLVGP--KNAFCVETI--AEIEK-----SA--------- Acof_DPh3 AGHALDLCTTGR---------------------------- Acof_DPh4 IGRALDLCSTG----------------------------- Acof_DPh1 ISKLVDFYAN------------------------------ Acof_DPh2 LNRIMEFYAN------------------------------ Ptri_DPh LGRIVEFYQH------------------------------ Srob_Dph4 LARVMELYAD------------------------------ Srob_Dph2 LGRVMEFYAD------------------------------ Srob_Dph1 LGRIMEFYVD------------------------------ Srob_Dph3 LGRVMEFYAD------------------------------ Esil_Phy3 LGDLLESIPVGSNPV------ESTAALCDALAKSMPA--- Esil_Phy1 MTDLMGCIPVGSNSL------VSTA--------------- Evir_Phy VTAS------------------------------------ Fvir_Phy ITAIMTFVSYNRGMVYRFLEDLCGEIICEKIGKGGGEEPR Firr_Phy ----------------------------------------

For the 2D structures text box:

Insert 2D Structures here :
Acof_DPh1 CCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCCCEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC Srob_Dph4 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC Srob_Dph2 CCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCC Acof_DPh2 CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCC Srob_Dph1 CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCC Esil_Phy3 CCCCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEECCCCCCCCCHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC Srob_Dph3 CHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC Evir_Phy CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC Esil_Phy1 CCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCC Acof_DPh3 CCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC Ptri_DPh CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCC Firr_Phy CCCHHHHHHHHHHHHHHCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCC Acof_DPh4 CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC Fvir_Phy CCCCHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCCCCHHHCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCCCCCCCC

Or see the the full example here See this Example

Compare Predictions

For the query text box:

Insert Query here :
ETAYFSDSNGQQKNRIQLTNKHADVKKQLKMVRLGDAELYVLEQLQPLIQENIVNIVDAFYKNLDHESSLMDIINDHSSVDRLKQTLKRHIQEMFAGVIDDEFIEKRNRIASIHLRIGLLPKWYMGAFQELLLSMIDIYEASITNQQELLKAIKATTKILNLEQQLVLE

For the 2D Predictions text box:

Insert 2D Predictions here (with respective tool names) :
PSIPRED CCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC JNET CCCCCCCCCCCCCCEEEEECCCCCHHHHHHCCHHCCCCCCHHHCCCCCHHHHHHHHHHHEEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC PROFC(Ouali) CHHHHHHHHCHHHCCHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCC PROFC(Rost) CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC

Or see the the full example here See this Example